Does anyone know of a programmer for a TJ that can also recalibrate the speedometer?

P.S. I'm about to install a Teraflax Super Short SYE and Tom Woods drive shaft.  

It is not needed for a TJ. The TJ uses a gear in the tail shaft housing. Change the gear and the pulse input changes. Look at Quadratec. They have a chart and sell the appropiate gear. Consider the SYE from Tom Woods. It comes with the SYE and new driveline for about $525. This is the best deal, best setup out there. The SYE is from AA I Think. It is short enough... but if you must get the super short...

http://www.teraflex.biz/installsheets/004444400-231ESS%20install.pdf

Look at the above link. If your gear/tire combo falls outside the grey area in the chart then Teraflex sells a convert box. Teraflex part number BLD33002.